fix: process manifest before other resources (#1740)

jadx-core/src/main/java/jadx/api/JadxDecompiler.java

@@ -309,9 +309,21 @@ public final class JadxDecompiler implements Closeable {
 		if (args.isSkipFilesSave()) {
 			return;
 		}
+		// process AndroidManifest.xml first to load complete resource ids table
+		for (ResourceFile resourceFile : getResources()) {
+			if (resourceFile.getType() == ResourceType.MANIFEST) {
+				new ResourcesSaver(outDir, resourceFile).run();
+			}
+		}
+
 		Set<String> inputFileNames = args.getInputFiles().stream().map(File::getAbsolutePath).collect(Collectors.toSet());
 		for (ResourceFile resourceFile : getResources()) {
-			if (resourceFile.getType() != ResourceType.ARSC
+			ResourceType resType = resourceFile.getType();
+			if (resType == ResourceType.MANIFEST) {
+				// already processed
+				continue;
+			}
+			if (resType != ResourceType.ARSC
 					&& inputFileNames.contains(resourceFile.getOriginalName())) {
 				// ignore resource made from input file
 				continue;
@@ -382,7 +394,7 @@ public final class JadxDecompiler implements Closeable {
 		return Utils.collectionMap(root.getClasses(), this::convertClassNode);
 	}
 
-	public List<ResourceFile> getResources() {
+	public synchronized List<ResourceFile> getResources() {
 		if (resources == null) {
 			if (root == null) {
 				return Collections.emptyList();

jadx-core/src/main/java/jadx/core/xmlgen/BinaryXMLParser.java

@@ -8,6 +8,7 @@ import java.util.Map;
 import java.util.Random;
 import java.util.Set;
 
+import org.jetbrains.annotations.Nullable;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 
@@ -51,7 +52,7 @@ public class BinaryXMLParser extends CommonBinaryParser {
 	private boolean isLastEnd = true;
 	private boolean isOneLine = true;
 	private int namespaceDepth = 0;
-	private int[] resourceIds;
+	private @Nullable int[] resourceIds;
 
 	private final RootNode rootNode;
 	private String appPackageName;
@@ -358,7 +359,7 @@ public class BinaryXMLParser extends CommonBinaryParser {
 		// As the outcome of https://github.com/skylot/jadx/issues/1208
 		// Android seems to favor entries from AndroidResMap and only if
 		// there is no entry uses the values form the XML string pool
-		if (0 <= id && id < resourceIds.length) {
+		if (resourceIds != null && 0 <= id && id < resourceIds.length) {
 			int resId = resourceIds[id];
 			String str = ValuesParser.getAndroidResMap().get(resId);
 			if (str != null) {

jadx-core/src/main/java/jadx/core/xmlgen/ResourcesSaver.java

@@ -29,7 +29,11 @@ public class ResourcesSaver implements Runnable {
 
 	@Override
 	public void run() {
-		saveResources(resourceFile.loadContent());
+		try {
+			saveResources(resourceFile.loadContent());
+		} catch (Throwable e) {
+			LOG.warn("Failed to save resource: {}", resourceFile.getOriginalName(), e);
+		}
 	}
 
 	private void saveResources(ResContainer rc) {